PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0070s00500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 158aa    MW: 17503.9 Da    PI: 9.6235
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0070s00500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.17.5e-45151582159
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  + +  + +h           +l   ++ + sn +k +++s+
  Vang0070s00500.1  15 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLS-LQQGFYSNAKKGQASSS 95 
                       78899*************************************9866555544444444443...........222.23334444333333322 PP

             YABBY  95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                       s s    +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn
  Vang0070s00500.1  96 SSSP---TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN 158
                       2222...244455666666669*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-5219158IPR006780YABBY protein
SuperFamilySSF470953.14E-7106156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
LFLRNMNHDD KLTMDLVPPS EHLCYVRCNF CNTVLAVGIP CKRLLDTVTV KCGHCSNLSF  60
LSTRPPNSQN QSIDHTLSLQ QGFYSNAKKG QASSSSSSPT TSNESVSPKA ASFVVKPPEK  120
KHRLPSAYNR FMKEEIQRIK AANPEIPHRE AFSAAAKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-153KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490685.11e-101PREDICTED: protein CRABS CLAW
SwissprotQ76EJ02e-65YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0S3T2721e-101A0A0S3T272_PHAAN; Uncharacterized protein
TrEMBLV7C9811e-101V7C981_PHAVU; Uncharacterized protein
STRINGGLYMA02G13350.23e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.15e-57YABBY family protein